CV D.M.F. Prazeres Curriculum vitae Duarte Miguel de França Teixeira dos Prazeres 1. General Position: Associate Professor Affiliation: Bioengineering Department, Instituto Superior Técnico (IST), Universidade de Lisboa Work address: Instituto Superior Técnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal Date and place of birth: June 17, 1966, Madeira, Portugal E-mail: [email protected] , Phone: +351-218419133 2. Education 1. Diploma in Chemical Engineering, University of Coimbra, Portugal, 1989. 2. Ph.D. Chemical Engineering, Instituto Superior Técnico, Technical University of Lisbon, Lisbon, Portugal, 1993. 3. Post Doctoral fellow at the Chemical Engineering Department of the Massachusetts Institute of Technology, Cambridge, Oct. 1996- July 1997, USA. 4. “Agregação” in Chemical Engineering, Instituto Superior Técnico, Technical University of Lisbon, Lisbon, Portugal, 2003. 5. Visiting Scholar at the Engineering Systems Division do Massachusetts Institute of Technology, Cambridge, Mar. 2007-May 2007. 3. Teaching (1992-2014) Subjects: Heat, Mass and Momentum Transfer, Separation and Purification of Biomolecules, Enzymatic Engineering, Chemical Engineering Laboratories, Nucleic Acids Engineering, Bioengineering and Market, Bioentrepreneurship, Biomimicry, Bioethics, Gene Therapy, Dissertation in Biological Engineering. Target audience: Graduation in Chemical Engineering and Biological Engineering; Masters in Biological Engineering, Biomedical Engineering, Biotechnology and Bioengineering and Nanosystems; Doctoral programs in Bioengineering. Coordination: Integrated Master in Biological Engineering (2012-present) 4. Current research activities 1. Plasmid biopharmaceuticals: Development of products and processes; 2. DNA, protein and cell microchips; 3. Miniaturization of GPCR screening assays. 4. Molecular Bioengineering and Biomimetics. 5. Publications 5.1 BOOKS 1 Prazeres, D.M.F., "Plasmid Biopharmaceuticals: Basics, Applications and Manufacturing", 2011, John Wiley & Sons, Inc., New York. ISBN: 978-0-470-23292-7 5.2 CHAPTERS IN BOOKS (17) 16 Monteiro, G.A., Silva, M.S., Henriques, A.M., Carvalho, J., Atouguia, J., Fevereiro, M., Prazeres, D.M.F., “Advances in DNA Vaccination: Design, Immunology and Manufacturing” in Veterinary Immunology and Immunopathology, L. Nermann and S. Meier (eds.), Nova Science Publishers Inc., New York, 2010, pp 129-155. 17 Oliveira, P.H., Prazeres, D.M.F., Monteiro, G.A., “Structural and Segregational Instability in Plasmid Biology”, in Plasmids – Genetics, Applications and Health, F. E. R. Gonzales and M. I. Lopez (eds.), Nova Science Publishers Inc., New York, 2012, pp 79-100. 5.3 SCIENTIFIC PUBLICATIONS (167) 147. Jóskowiak, A., Santos, M., Prazeres, D.M.F., Chu, V., Conde, J.P. “Integration of Thin Film Amorphous Silicon Photodetectors with Lab-on-a-chip for Monitoring Protein Fluorescence in Solution and in Live Microbial Cells”, Sensors Act. B: Chemical 156 (2011) 662-667. 148. Gomes, G.A., Azevedo, A.M., Aires-Barros, M.R., Prazeres, D.M.F., “Studies on the Adsorption of Cell Impurities from Plasmid-Containing Lysates to Phenyl-Boronic Acid Chromatographic Beads”, J. Chromatogr. A, 1218 (2011) 8629-8637. 1 CV D.M.F. Prazeres 149. Novo, P., Prazeres, D.M.F., Chu, V., Conde, J.P., “Microspot-based ELISA in Microfluidics: Chemiluminescence and Colorimetry Detection Using Integrated Thin-film Hydrogenated Amorphous Silicon Photodiodes”, Lab-on-a-Chip 11 (2011) 4063-4071. 150. Martins, D.C., Prazeres, D.M.F., Chu, V., Conde, J.P., “Label-free Detection of DNA Immobilization and Hybridization by Streaming Current Measurements in Microchannels”, App. Physics Lett. 99 (2011) 183702. 151. Gonçalves, G.A.L., Bower, D.M., Prazeres, D.M.F., Monteiro, G.A., Prather, K.L.J., “Rational Engineering of Escherichia coli Strains for Plasmid Biopharmaceutical Manufacturing”, J. Biotechnol., 7 (2012) 251-261. 152. Lewis, L.A., Astatke, M., Umekubo, P.T., Alvi, S., Saby, R., Afrose, J., Oliveira, P.H., Monteiro, G.A., Prazeres, D.M.F., “Protein-DNA Interactions Define the Mechanistic Aspects of Circle Formation and Insertion Reactions in IS2 Transposition”, Mobile DNA, 3 (2012) 1-24. 153. Toledo, M.A.S., Janissen, R., Favaro, M.T.P., Cotta, M.A., Monteiro, G.A., Prazeres, D.M.F., Souza, A.P., Azzoni, A.R.,“Development of a Recombinant Fusion Protein Based on the Dynein Light Chain LC8 for Non-viral Gene Delivery”, J. Controlled Release, 159 (2012) 222-231. 154. Jóskowiak, A., Stasio, N., Chu, V., Prazeres, D.M.F., Conde, J.P. “Integrated Detection of Intrinsic Fluorophores in Live Microbial Cells Using an Array of Thin Film Amorphous Silicon Photodetectors”, Biosensors & Bioelectronics, 36 (2012) 242-249. 155. Gomes, G.A., Azevedo, A.M., Aires-Barros, M.R., Prazeres, D.M.F., “Validation and Scaleup of Plasmid DNA Purification by Phenyl-Boronic Acid Chromatography”, J. Sep. Sci., 35 (2012) 3190-3196. 156. Martins, S.A.M., Trabuco, J.R.C., Monteiro, G.A., Chu, V., Conde, J.P., Prazeres, D.M.F. “Towards the Miniaturization of GPCR-based Live-cell Screening Assays”, Trends Biotechnol., 30 (2012) 566-574. 157. Gonçalves, G.A.L., Prazeres, D.M.F., Monteiro, G.A., Prather, K.L.J., “De Novo Creation of MG1655-derived Escherichia coli Strains Specifically Designed for Plasmid DNA Production”, App. Microbiol. Biotechnol., 97 (2013) 611-620. 158. Novo, P., Moulas, G., Prazeres, D.M.F., Chu, V., Conde, J.P., “Detection of Ochratoxin A in Wine and Beer by Chemiluminescence-based ELISA in a Microfluidic Structure with Integrated Optical Detection”, Sensors Act. B: Chemical 176 (2013) 232-240. 159. Donato, S.S., Chu, V., Prazeres, D.M.F., Conde, J.P., “Metabolic Viability of E. coli Trapped by Dielectrophoresis in Microfluidics”, Electrophoresis 34 (2013) 575-582. 160. Martins, D.C., Chu, V, Prazeres, D.M.F., Conde, J.P., “Streaming Current Measurements in a Single PDMS/glass Microchannel with Integrated Polarizable Electrodes”, Microfluidics and Nanofluidics 15 (2013) 361-376. 161. De la Vega, J., Braak, B., Monteiro, G.A., Azzoni, A.R., Prazeres, D.M.F., “Impact of Plasmid Quality on Lipoplex-Mediated Transfection”, J. Pharm. Sci. 102 (2013) 3932-3941. 162. Raiado, L.P., Prazeres, D.M.F., Mateus, M., “Impact of Plasmid Size on the Purification of Model Plasmid DNA Vaccines by Phenyl Membrane Adsorbers”, J. Chromatog. A, 1315 (2013) 145-151. 163. Martins, S.A.M., Moulas, G., Trabuco, J.R.C., Monteiro, G.A., Chu, V., Conde, J.P., Prazeres, D.M.F., “Monitoring Intracellular Calcium in Response to GPCR Activation Using Thin-film Silicon Photodiodes with Integrated Fluorescence Filters”, Biosensors Bioelectronics, 52 (2014) 232-238. 164. Simcikova, M., Prather, K.L.J., Prazeres, D.M.F., Monteiro, G.A., “On the Dual Effect of Glucose During Production of pBAD/AraC-based Minicircles”, Vaccine, 32 (2014) 28432846. 165. Gonçalves, G.A.L., Prather, K.L.J., Monteiro, G.A., Prazeres, D.M.F., “Engineering of Escherichia coli Strains for Plasmid Biopharmaceutical Production: Scale-up Challenges”, Vaccine, 32 (2014) 2847-2850. 166. Raiado, L.P., De la Vega, J., Prazeres, D.M.F., Mateus, M., “Development of a Phenyl Membrane Chromatography–based Process Yielding Pharmaceutical Grade Plasmid DNA for Mammalian Cells Transfection”, J. Chromatogr. A, 1337 (2014) 67-74. 167. Rosa, A.M.M., Louro, A.F., Martins, S.A.M., Silva, J.J.I., Azevedo, A.M., Prazeres, D.M.F. “Capture and Detection of DNA Hybrids on Paper via the Anchoring of Antibodies with Fusions of Carbohydrate Binding Modules with ZZ-domains”, Anal. Chem., 86 (2014) 43404347. 2