Additional file 2: Individuals samples in this study. Columns indicate voucher or tissue number,
municipality and state of the sampled locality, locality code (L), sequenced mtDNA fragments,
mtDNA haplotype (Hap.), mtDNA main clade or subclade (clade), allele number for alleles 1 and 2 of
sequenced nuclear fragments, and individual number in the STRUCTURE analysis (STR).
mtDNA
number
CFBH-T10831
CFBH-T10832
CFBH-T10833
CFBH-T10834
CFBH-T10841
PHV1450
PHV1451
MTJ26
MTJ27
MTJ53
MTJ54
MTJ55
MTJ56
MTJ71
MTJ72
MTJ84
MTJ85
CFBH-T3642
CFBH-T3645
CFBH-T3650
CFBH-T3658
CFBH-T3663
CFBH-T9161
MNRJ35341
MNRJ35342
CFBH-T9233
CFBH-T4151
CFBH-T9129
CFBH-T9131
CFBH-T9132
CFBH-T9140
CFBH-T9141
CFBH-T9147
CFBH-T9176
CFBH-T9181
CFBH-T3572
CFBH-T3577
CFBH-T3578
CFBH-T3586
CFBH-T3591
CFBH-T3596
CFBH-T3605
CFBH-T3609
MRT 5806
MRT 5975
MTR 13599
MTR 13608
municipality
Guaramiranga
Guaramiranga
Guaramiranga
Guaramiranga
Guaramiranga
São Desidério
São Desidério
Januária
Januária
Januária
Januária
Januária
Januária
Januária
Januária
Januária
Januária
Areia
Recife
Recife
Recife
Recife
Itacaré
Itacaré
Itacaré
Aurelino Leal
Uruçuca
Uruçuca
Uruçuca
Uruçuca
Uruçuca
Uruçuca
Uruçuca
Uruçuca
Uruçuca
Itabuna
Itabuna
Itabuna
Itabuna
Itabuna
Itabuna
Itabuna
Itabuna
Jussari
Jussari
Camacan
Camacan
state
CE
CE
CE
CE
CE
BA
BA
MG
MG
MG
MG
MG
MG
MG
MG
MG
MG
PB
PE
PE
PE
PE
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
L
1
1
1
1
1
2
2
3
3
3
3
3
3
3
3
3
3
4
5
5
5
5
6
6
6
7
8
8
8
8
8
8
8
8
8
9
9
9
9
9
9
9
9
10
10
11
11
fragments
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
-1-
Hap.
hap1
hap1
hap2
hap1
hap1
hap289
hap290
hap285
hap286
hap285
hap287
hap286
hap285
hap285
hap288
hap287
hap285
hap222
hap223
hap223
hap223
hap223
hap248
hap273
hap274
hap280
hap232
hap244
hap245
hap246
hap247
hap248
hap249
hap245
hap249
hap214
hap215
hap216
hap217
hap218
hap219
hap220
hap221
hap268
hap267
hap260
hap261
clade
G
G
G
G
G
P
P
P
P
P
P
P
P
P
P
P
P
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
a.polypep.
al.1 al.2
nuclear
crystallin
al.1 al.2
rhodopsin
al.1 al.2
STR
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
1
3
1
1
48
9
1
50
48
48
48
48
37
5
37
35
5
42
37
35
42
5
1
36
35
36
2
3
2
2
49
9
9
48
48
48
49
48
36
37
35
35
36
35
39
36
37
36
35
39
36
36
1
1
1
1
150
150
150
150
150
150
150
150
150
150
150
106
108
110
1
112
129
141
117
118
126
128
-
1
1
1
1
150
150
150
150
150
150
150
150
150
150
150
107
109
111
1
113
129
142
146
119
105
5
-
1
1
2
2
20
2
20
2
20
2
2
2
7
20
20
8
11
2
2
2
11
11
11
11
11
2
2
2
11
1
11
11
11
11
11
2
2
2
2
20
24
11
24
11
24
24
24
7
20
20
8
11
2
2
2
11
11
11
11
21
2
22
11
11
22
11
11
11
11
11
36
35
5
38
38
29
9
36
36
36
35
36
39
9
105
139
134
114
105
105
135
84
11
2
11
11
2
11
11
11
11
11
11
11
11
11
11
11
mtDNA
number
MTR 13609
MTR 13610
MTR 13620
MTR 13621
MTR16007
MTR16011
MTR16045
CFBH-T12560
CFBH-T12561
CFBH-T12564
CFBH-T12565
PUCMG2
MNRJ38920
MNRJ38921
CFBH-T2389
PUCMG1
MTR 13384
MTR 13385
MTR 13472
MTR 13482
MTR 13594
MTR 13595
MTR 13646
CFBH-T4062
CFBH-T4063
CFBH-T4064
CFBH-T4065
CFBH-T4066
CFBH-T4067
CFBH-T4068
CFBH-T4069
CFBH-T4070
CFBH-T4071
CFBH-T7689
AF402
CFBH-T7652
CFBH-T7660
CFBH-T7664
JC 794
CFBH-T7482
CFBH-T7492
CFBH-T7532
MNRJ38327
MNRJ38329
CFBH-T10842
MTR 11543
MTR 11548
MTR15751
MTR15756
MTR 11588
MRT 1252
MRT 1253
MTR 12585
MTR 12609
municipality
Camacan
Camacan
Camacan
Camacan
Camacan
Camacan
Camacan
Camacan
Camacan
Camacan
Camacan
Sta. Maria do Salto
Porto Seguro
Porto Seguro
Grão Mogol
Cristália
Trancoso
Trancoso
Trancoso
Trancoso
Trancoso
Trancoso
Trancoso
Caraíva
Caraíva
Caraíva
Caraíva
Caraíva
Caraíva
Caraíva
Caraíva
Caraíva
Caraíva
Prado
Santa Bárbara
Nova Lima
Nova Lima
Nova Lima
Mariana
Ouro Branco
Ouro Branco
Ouro Branco
Catas Altas
Catas Altas
Belo Horizonte
Santa Marta
Santa Marta
Espera Feliz
Espera Feliz
Córrego Calçado
Ibitirama
Ibitirama
Ibitirama
Ibitirama
state
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
MG
BA
BA
MG
MG
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
BA
MG
MG
MG
MG
MG
MG
MG
MG
MG
MG
MG
MG
MG
ES
ES
ES
ES
ES
ES
ES
L
11
11
11
11
11
11
11
11
11
11
11
12
13
13
14
15
16
16
16
16
16
16
16
17
17
17
17
17
17
17
17
17
17
18
19
20
20
20
21
22
22
22
23
23
24
25
25
26
26
27
28
28
28
28
fragments
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
-2-
Hap.
hap262
hap261
hap263
hap264
hap277
hap278
hap260
hap281
hap282
hap283
hap284
hap258
hap275
hap265
hap207
hap279
hap255
hap256
hap257
hap258
hap259
hap230
hap265
hap224
hap225
hap226
hap227
hap228
hap229
hap224
hap227
hap230
hap231
hap239
hap266
hap238
hap94
hap237
hap153
hap92
hap93
hap94
hap190
hap191
hap116
hap157
hap158
hap193
hap276
hap159
hap141
hap142
hap146
hap141
clade
a.polypep.
al.1 al.2
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
C
N
C
C
C
C
C
C
C
C
C
C
N
C
C
C
C
C
5
9
5
35
38
38
5
5
36
5
5
38
46
1
1
38
5
5
29
5
29
38
5
5
35
5
5
38
38
5
20
1
5
8
20
5
29
31
8
5
1
1
24
-
9
39
29
9
9
35
1
35
36
39
38
36
5
1
47
38
43
38
44
44
35
38
39
38
9
8
1
38
5
9
9
27
5
9
8
8
30
32
9
5
1
24
25
-
nuclear
crystallin
al.1 al.2
136
144
105
114
148
117
143
131
99
81
131
132
66
114
116
99
114
66
138
125
126
80
65
67
68
87
88
83
84
90
84
77
78
-
137
119
145
147
121
149
105
117
81
140
117
133
99
115
115
82
117
127
121
125
126
81
66
66
69
87
89
83
85
91
84
77
79
-
rhodopsin
al.1 al.2
STR
2
11
11
11
11
11
11
2
11
11
2
11
11
11
2
11
2
11
11
11
11
11
11
11
11
11
2
11
2
11
2
11
2
11
11
2
2
7
10
11
2
2
11
2
2
11
2
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
39
38
40
41
42
-
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
11
8
11
11
11
11
11
11
11
11
11
11
11
2
11
8
10
11
11
11
11
2
11
11
11
mtDNA
number
MTR 10732
MTR 10733
MTR15775
CFBH-T9177
CFBH-T5935
CFBH-T5936
CFBH-T5945
CFBH-T10466
CFBH-T9043
CFBH-T9046
MTR 12132
MTR 12200
MTR 12248
CFBH-T3362
CFBH-T3367
CFBH-T3370
CFBH-T3373
CFBH-T9008
CFBH-T9009
CFBH-T9014
CFBH-T9080
CFBH-T9178
CFBH-T5953
MNRJ34956
CFBH-T3393
CFBH-T3397
CFBH-T3400
CFBH-T3407
LSH1
LSH38
LSH39
LSH60
MTR 1237
CFBH-T9324
CFBH-T9325
Tfreitas
CFBH-T4380
CFBH-T9331
CFBH-T10355
CFBH-T3377
CFBH-T3381
CFBH-T3385
CFBH-T3387
CFBH-T3422
CFBH-T2317
CFBH-T5086
CFBH-T5087
CFBH-T3099
CFBH-T7699
CFBH-T7705
CFBH-T7712
CFBH-T7717
CFBH-T7727
CFBH-T0867
municipality
Caparaó
Caparaó
Dores do Rio Preto
Sooretama
Sooretama
Sooretama
Sooretama
Linhares
Linhares
Linhares
Linhares
Linhares
Linhares
Aracruz
Aracruz
Aracruz
Aracruz
Santa Leopoldina
Santa Leopoldina
Santa Leopoldina
Santa Leopoldina
Santa Tereza
Santa Tereza
Santa Tereza
Vila Velha
Vila Velha
Vila Velha
Vila Velha
Guarapari
Guarapari
Guarapari
Anchieta
S. José do Calçado
Teresópolis
Teresópolis
Itaipava
Petrópolis
Guapimirim
Seropédica
Itaguaí
Itaguaí
Itaguaí
Itaguaí
Itaguaí
Cristina
Cristina
Cristina
S. R. Passa Quatro
Bauru
Bauru
Bauru
Bauru
Bauru
Sto. Ant. do Pinhal
state
MG
MG
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
ES
RJ
RJ
RJ
RJ
RJ
RJ
RJ
RJ
RJ
RJ
RJ
MG
MG
MG
SP
SP
SP
SP
SP
SP
SP
L
29
29
30
31
31
31
31
32
32
32
32
32
32
33
33
33
33
34
34
34
34
35
35
35
36
36
36
36
37
37
37
38
39
40
40
41
42
43
44
45
45
45
45
45
46
46
46
47
48
48
48
48
48
49
fragments
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control
control,ND1,ND2
ND1
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
-3-
Hap.
hap269
hap156
hap194
hap291
hap233
hap234
hap235
hap250
hap242
hap243
hap270
hap271
hap272
hap208
hap41
hap209
hap210
hap240
hap240
hap241
hap110
hap206
hap236
hap236
hap206
hap211
hap212
hap213
hap251
hap252
hap253
hap254
hap140
hap204
hap204
hap203
hap68
hap205
hap112
hap44
hap208
hap42
hap43
hap44
hap13
hap72
hap73
hap21
hap95
hap96
hap95
hap95
hap97
hap5
clade
N
C
C
N
N
N
N
N
N
N
N
N
N
N
C
N
N
N
N
N
C
N
N
N
N
N
N
N
N
N
N
N
C
C
C
C
C
C
C
C
N
C
C
C
C
C
C
C
C
C
C
C
C
C
a.polypep.
al.1 al.2
nuclear
crystallin
al.1 al.2
rhodopsin
al.1 al.2
STR
44
43
45
47
46
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
27
26
8
27
82
82
82
67
23
11
23
11
5
1
5
9
5
5
5
5
5
5
1
1
24
5
40
5
5
24
24
35
1
1
9
1
5
1
5
9
1
14
9
9
1
41
1
35
45
9
97
120
122
114
129
140
99
43
82
128
99
102
98
121
123
124
129
131
105
43
101
5
100
103
11
1
1
11
11
11
11
11
11
11
11
11
11
11
19
11
2
2
1
2
2
11
11
2
2
11
11
11
11
11
11
11
8
11
11
11
11
11
11
11
2
2
11
11
24
24
104
104
2
11
5
5
1
5
130
95
100
96
2
2
5
1
1
1
1
1
1
6
5
5
5
5
5
5
5
5
6
1
1
1
34
6
6
6
6
5
5
5
5
5
5
10
5
6
75
45
54
4
44
45
6
56
58
30
13
11
70
6
76
45
55
94
45
46
20
57
13
59
13
20
11
6
2
2
2
2
11
2
11
2
2
2
2
2
2
2
1
10
2
2
20
20
11
13
13
11
2
2
2
2
2
2
12
2
12
2
mtDNA
number
CFBH-T0868
CFBH-T1278
CFBH-T6526
CFBH-T3170
CFBH-T3174
CFBH-T0336
CFBH-T2588
CFBH-T3628
CFBH-T3633
CFBH-T3638
CFBH-T3659
CFBH-T3803
CFBH-T3806
CFBH-T3834
CFBH-T3836
CFBH-T8867
CFBH-T8890
CFBH-T8891
CFBH-T8900
CFBH-T2664
CFBH-T4008
CFBH-T4009
CFBH-T4010
CFBH-T6033
CFBH-T6048
CFBH-T6053
CFBH-T6054
H-466
H-478
H-485
H-488
UF94/18
UF94/30
CFBH-T1956
CFBH-T2516
CFBH-T2517
CFBH-T3491
CFBH-T3896
CFBH-T3897
CFBH-T3910
CFBH-T5522
AF1430
AF1435
AF1443
CFBH-T3953
CFBH-T3954
MTR 16675
MTR10400
MTR10402
IT-H0023
IT-H0025
CFBH-T10514
CFBH-T3856
CFBH-T3912
municipality
Sto. Ant. do Pinhal
S. Luís Paraitinga
S. Luís Paraitinga
Nat. da Serra
Nat. da Serra
Ubatuba
Ubatuba
Ubatuba
Ubatuba
Ubatuba
Ubatuba
Caraguatatuba
Caraguatatuba
Caraguatatuba
Caraguatatuba
São Sebastião
São Sebastião
São Sebastião
São Sebastião
Ilha Bela
Ilha Bela
Ilha Bela
Ilha Bela
Ilha Bela
Ilha Bela
Ilha Bela
Ilha Bela
Bertioga
Bertioga
Bertioga
Bertioga
Bertioga
Bertioga
Cubatão
Cubatão
Cubatão
Cubatão
Cubatão
Cubatão
Cubatão
Cubatão
Santos
Santos
Santos
Santos
Santos
Santo André
Santo André
Santo André
São Bernardo
São Bernardo
Itanhaém
Itanhaém
Itanhaém
state
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
L
49
50
50
51
51
52
52
52
52
52
52
53
53
53
53
54
54
54
54
55
55
55
55
55
55
55
55
56
56
56
56
56
56
57
57
57
57
57
57
57
57
58
58
58
58
58
59
59
59
60
60
61
61
61
fragments
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
-4-
Hap.
hap5
hap8
hap86
hap22
hap4
hap4
hap16
hap47
hap48
hap49
hap50
hap53
hap13
hap54
hap55
hap107
hap108
hap109
hap109
hap17
hap63
hap64
hap65
hap17
hap63
hap85
hap13
hap185
hap183
hap109
hap184
hap109
hap183
hap10
hap14
hap15
hap45
hap57
hap58
hap59
hap75
hap179
hap180
hap181
hap61
hap62
hap13
hap154
hap155
hap163
hap164
hap113
hap56
hap60
clade
a.polypep.
al.1 al.2
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
5
5
5
5
5
5
14
6
6
6
5
5
5
5
5
5
5
5
5
5
5
5
5
5
6
5
6
5
5
5
6
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
10
5
5
5
5
6
5
5
5
5
6
15
6
6
6
16
6
5
6
17
6
5
6
6
5
6
5
5
6
6
5
6
17
5
5
6
12
10
5
5
5
5
17
1
1
17
5
18
5
5
10
5
10
10
5
5
10
nuclear
crystallin
al.1 al.2
7
16
22
6
32
4
24
4
45
49
49
22
41
13
22
6
22
22
22
22
22
5
6
22
6
21
23
47
23
63
22
6
22
41
46
35
22
22
11
52
20
7
17
6
4
25
5
25
5
22
49
49
22
9
28
41
22
22
22
22
22
22
9
22
22
19
22
22
9
41
37
22
22
41
22
22
22
22
22
12
53
35
rhodopsin
al.1 al.2
STR
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
10
2
2
2
5
2
2
2
2
12
2
2
2
2
2
2
2
2
2
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
93
94
91
92
95
96
97
100
98
99
2
2
2
2
2
2
11
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
19
2
2
2
2
2
2
2
2
2
mtDNA
number
CFBH-T5869
CFBH-T5870
CFBH-T5871
AF122
AF147
AF151
AF160
AF169
CFBH-T2246
CFBH-T2248
CFBH-T4031
CFBH-T4032
CFBH-T5144
CFBH-T6957
CFBH-T6976
CFBH-T7034
CFBH-T6952
CFBH-T7322
CFBH-T10697
CFBH-T8433
CFBH-T8434
CFBH-T8547
CFBH-T8548
CFBH-T8683
CFBH-T5155
AF403
MTR 9957
MTR 9958
MTR 9959
MTR 9960
MTR 9963
CFBH-T3108
CFBH-T8274
CFBH-T8275
CFBH-T8276
Uniban2555
CFBH-T3180
CFBH-T3184
CFBH-T3189
CFBH-T3190
CFBH-T3194
CFBH-T3195
CFBH-T3202
CFBH-T3204
CFBH-T3206
CFBH-T4426
CFBH-T4427
MTR15559
IT-H0437
IT-H0438
IT-H0439
IT-H0459
IT-H0461
IT-H0462
municipality
Peruíbe
Peruíbe
Peruíbe
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Iguape
Pariquera Açú
Ilha Comprida
Cananéia
Cananéia
Cananéia
Cananéia
Cananéia
Cananéia
Ilha do Cardoso
São Paulo
São Paulo
São Paulo
São Paulo
São Paulo
São Paulo
Cotia
Biritiba Mirim
Biritiba Mirim
Biritiba Mirim
Biritiba Mirim
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Santa Isabel
Iperó
Juquitiba
Juquitiba
Juquitiba
Juquitiba
Juquitiba
Juquitiba
state
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
L
62
62
62
63
63
63
63
63
63
63
63
63
63
63
63
63
64
65
66
66
66
66
66
66
67
68
68
68
68
68
68
69
70
70
70
70
71
71
71
71
71
71
71
71
71
71
71
72
73
73
73
73
73
73
fragments
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
-5-
Hap.
hap83
hap83
hap84
hap143
hap144
hap145
hap147
hap90
hap11
hap12
hap66
hap67
hap74
hap88
hap89
hap90
hap87
hap91
hap103
hap103
hap104
hap105
hap104
hap106
hap32
hap149
hap113
hap188
hap189
hap5
hap182
hap13
hap29
hap101
hap102
hap5
hap5
hap23
hap24
hap24
hap25
hap26
hap27
hap28
hap29
hap69
hap70
hap192
hap167
hap168
hap45
hap169
hap66
hap113
clade
a.polypep.
al.1 al.2
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
5
4
4
5
5
5
5
5
5
5
5
1
19
5
5
10
5
5
5
5
5
5
5
5
5
5
5
5
4
5
5
5
17
5
28
5
5
5
5
5
5
12
6
5
5
5
5
5
5
5
17
5
5
5
16
5
5
16
5
5
5
5
1
16
19
5
5
16
5
5
5
5
23
5
5
5
10
5
5
5
5
5
5
5
17
5
17
6
5
5
5
11
5
11
6
5
5
5
5
10
10
5
10
5
nuclear
crystallin
al.1 al.2
26
28
11
9
9
8
20
60
9
13
13
13
13
62
20
41
41
6
28
6
14
6
33
22
6
20
4
34
35
36
6
35
41
22
20
35
29
8
11
9
11
20
11
61
27
13
13
11
13
22
22
22
41
11
32
9
26
6
22
4
6
6
22
22
22
37
6
9
11
11
11
35
rhodopsin
al.1 al.2
2
2
2
2
2
2
9
2
2
2
2
2
2
2
2
2
2
1
2
2
2
2
2
2
2
2
2
2
2
2
2
2
12
2
2
1
14
12
12
2
2
1
2
2
2
2
2
2
9
2
2
2
2
2
2
11
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
11
2
2
6
2
2
2
2
12
6
18
2
2
STR
101
102
106
107
103
104
105
108
111
109
110
112
113
115
116
114
117
118
119
120
124
121
122
123
125
127
mtDNA
number
IT-H0463
IT-H0468
IT-H0538
AF303
AF304
AF316
AF423
ALC86/77
ALC86/80
ALC86/81
ALC87/1
ALC87/3
ALC87/5
H023
H035
IT-H0207
IT-H0208
IT-H0209
UF88/60
H0300
H0355
H0356
H0366
IT-H0573
IT-H0580
IT-H0581
IT-H0583
IT-H0610
IT-H0612
IT-H0613
CFBH-T5679
CFBH-T5680
CFBH-T5681
CFBH-T5682
CFBH-T5683
CFBH-T5684
CFBH-T5685
CFBH-T5686
CFBH-T5687
CFBH-T5688
CFBH-T5041
CFBH-T1034
CFBH-T1035
IIH-149
IIH-172
IIH-224
II - H046
II - H114
CFBH-T11188
CFBH-T9476
CFBH-T7881
CFBH-T7897
CFBH-T7898
CFBH-T9512
municipality
Juquitiba
Juquitiba
Juquitiba
Carapicuíba
Carapicuíba
Carapicuíba
Carapicuíba
Piedade
Piedade
Piedade
Piedade
Piedade
Piedade
Piedade
Piedade
Piedade
Piedade
Piedade
Piedade
Buri
Buri
Buri
Buri
Buri
Buri
Buri
Buri
Buri
Buri
Buri
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Ribeirão Grande
Guapiara
Ribeirão Branco
Ribeirão Branco
Wenceslau Brás
Wenceslau Brás
Wenceslau Brás
Pinhalão
Ortigueira
Ortigueira
Teodoro Sampaio
Teodoro Sampaio
Teodoro Sampaio
Teodoro Sampaio
Teodoro Sampaio
state
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
SP
PR
PR
PR
PR
PR
PR
SP
SP
SP
SP
SP
L
73
73
73
74
74
74
74
75
75
75
75
75
75
75
75
75
75
75
75
76
76
76
76
76
76
76
76
76
76
76
77
77
77
77
77
77
77
77
77
77
78
79
79
80
80
80
81
82
82
83
83
83
83
83
fragments
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND2
control,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
-6-
Hap.
hap45
hap170
hap171
hap45
hap5
hap148
hap150
hap5
hap113
hap113
hap160
hap161
hap162
hap113
hap186
hap165
hap166
hap66
hap113
hap174
hap151
hap187
hap152
hap173
hap80
hap174
hap175
hap151
hap152
hap151
hap76
hap77
hap78
hap79
hap80
hap81
hap82
hap79
hap80
hap80
hap71
hap6
hap7
hap176
hap177
hap178
hap172
hap151
hap121
hap199
hap200
hap201
hap201
hap202
clade
a.polypep.
al.1 al.2
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
C
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
17
5
5
5
5
5
5
5
5
10
5
5
5
5
5
5
5
5
5
5
5
5
5
5
4
5
5
5
5
5
5
5
5
5
5
5
1
5
5
5
5
5
5
17
5
17
5
5
5
5
5
17
5
5
10
5
5
5
5
5
5
10
5
10
10
5
5
5
5
10
5
5
10
5
10
5
5
10
5
5
1
5
5
1
5
1
1
1
5
1
1
nuclear
crystallin
al.1 al.2
6
9
9
20
34
28
41
28
64
41
6
20
64
20
10
20
29
10
9
26
11
64
28
26
29
40
10
9
10
10
10
10
86
9
10
93
10
10
41
11
11
20
41
28
41
28
20
22
41
11
20
29
11
11
29
26
11
27
29
9
11
26
9
11
10
10
26
26
10
26
13
9
26
26
26
26
rhodopsin
al.1 al.2
STR
12
2
6
1
2
12
10
2
12
12
2
12
10
1
1
10
1
10
10
1
12
1
10
1
12
10
1
1
1
2
1
1
1
1
12
10
10
10
12
12
10
10
10
10
128
126
129
130
131
132
135
133
134
141
140
139
137
138
136
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
12
2
6
12
2
12
2
2
6
12
2
6
1
1
1
1
12
10
1
1
12
1
1
12
12
12
12
12
12
12
2
12
12
2
12
12
12
12
12
12
12
12
12
10
mtDNA
number
CFBH-T7899
CFBH-T9513
CFBH-T9514
IIBPH1333
IIBPH1173
IIBPH1191
IIBPH1336
IIBPH1342
IIBPH1353
IIBPH1356
MVS243
MVS244
MVS242
CFBH-T3619
CFBH-T9193
CFBH-T12598
CFBH-T3084
CFBH-T3085
CFBH-T3086
CFBH-T3304
CFBH-T3306
CFBH-T3310
CFBH-T3312
K970
CFBH-T10261
CFBH-T3665
CFBH-T3666
CFBH-T3672
CFBH-T3679
CFBH-T3314
CFBH-T9201
CFBH-T9202
CFBH-T9202
CFBH-T9204
CFBH-T9205
CFBH-T9206
CFBH-T9207
CFBH-T9208
CFBH-T9209
CFBH-T9210
CFBH-T9211
CFBH-T3316
CFBH-T3320
CFBH-T3323
CFBH-T3343
CFBH-T3348
CFBH-T3351
CFBH-T9194
CFBH-T9195
CFBH-T9196
CFBH-T9197
CFBH-T9198
CFBH-T9199
CFBH-T9200
municipality
Teodoro Sampaio
Teodoro Sampaio
Teodoro Sampaio
Canindeyú
Itapúa
Itapúa
Itapúa
Itapúa
Itapúa
Itapúa
Adrianópolis
Adrianópolis
Ribeira
Quatro Barras
Quatro Barras
Antonina
Antonina
Antonina
Antonina
Morretes
Morretes
Morretes
Morretes
São José dos Pinhais
Guaratuba
Guaratuba
Guaratuba
Guaratuba
Guaratuba
Itapoá
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Massaranduba
Rio dos Cedros
Rio dos Cedros
Rio dos Cedros
Blumenau
Blumenau
Blumenau
Blumenau
Blumenau
Blumenau
Blumenau
Blumenau
Blumenau
Blumenau
state
SP
SP
SP
PAR
PAR
PAR
PAR
PAR
PAR
PAR
PR
PR
SP
PR
PR
PR
PR
PR
PR
PR
PR
PR
PR
PR
PR
PR
PR
PR
PR
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
L
83
83
83
84
85
85
85
85
85
85
86
86
87
88
88
89
89
89
89
90
90
90
90
91
92
92
92
92
92
93
94
94
94
94
94
94
94
94
94
94
94
95
95
95
96
96
96
96
96
96
96
96
96
96
fragments
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
-7-
Hap.
hap202
hap200
hap200
hap119
hap117
hap118
hap120
hap121
hap113
hap113
hap196
hap197
hap195
hap46
hap124
hap3
hap18
hap19
hap20
hap30
hap31
hap32
hap33
hap123
hap111
hap51
hap51
hap52
hap33
hap34
hap131
hap132
hap133
hap134
hap135
hap136
hap134
hap136
hap137
hap138
hap139
hap35
hap36
hap37
hap38
hap39
hap40
hap125
hap126
hap126
hap127
hap128
hap129
hap130
clade
C
C
C
C
C
C
C
C
C
C
c1
C
C
c1
c1
c1
C
c1
C
c1
c1
C
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
c1
a.polypep.
al.1 al.2
nuclear
crystallin
al.1 al.2
rhodopsin
al.1 al.2
STR
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
-
5
5
5
5
5
5
5
5
5
4
33
4
4
4
5
4
5
4
5
1
5
5
1
5
5
1
5
5
5
33
5
4
5
5
7
7
5
1
10
10
9
9
9
9
20
9
28
92
28
48
41
26
28
29
11
11
27
26
9
9
9
9
9
9
9
13
26
13
11
41
27
26
27
38
9
11
10
10
10
10
12
10
10
12
10
10
10
5
6
1
10
1
2
1
10
12
12
12
12
12
12
12
12
10
12
6
17
2
1
12
2
12
5
4
4
4
5
5
5
4
4
7
1
4
7
1
4
7
7
4
4
13
4
4
4
4
7
1
4
1
7
5
5
7
5
7
1
5
7
7
4
7
7
1
7
7
4
4
7
7
1
7
1
7
7
7
8
8
8
50
22
27
9
9
74
73
38
9
26
15
39
40
42
14
11
15
15
72
15
73
15
9
26
9
11
11
51
11
26
11
9
9
9
41
11
73
9
11
41
11
9
15
9
15
11
9
9
73
72
41
10
1
1
1
5
10
5
12
5
5
1
1
1
1
6
1
6
10
1
-
2
2
5
1
6
12
5
6
5
5
1
5
12
5
6
1
6
5
1
-
mtDNA
number
CFBH-T10731
CFBH-T10732
CFBH-T1735
PUCRS
CFBH-T8092
CFBH-T8093
CFBH-T8094
CFBH-T8095
CFBH-T8096
CFBH-T8097
CFBH-T8098
CFBH-T8099
ELMG453
CFBH-T11195
CFBH-T11196
MVS398
CFBH-T10793
CFBH-T10794
CFBH-T9184
CFBH-T9186
CFBH-T9188
EMLG234
EMLG235
EMLG236
EMLG237
EMLG253
EMLG453
flona062007
flona1603
MNRJ33006
MNRJ33012
CFBH-T8298
UFRGST667
CFBH-T9213
CFBH-T1338
CFBH-T3051
CFBH-T3354
CFBH-T3361
CFBH-T5092
CFBH-T5731
CFBH-T8885
CFBH-T8933
municipality
Gov. Celso Ramos
Gov. Celso Ramos
Itapema
S.. Am. Imperatriz
Anitápolis
Anitápolis
Anitápolis
Anitápolis
Anitápolis
Anitápolis
Anitápolis
Anitápolis
Ponte Serrada
Ponte Serrada
Fernandes Pinheiro
Salete
Xavantina
Xavantina
Xavantina
Xavantina
Xavantina
Guatambú
Guatambú
Guatambú
Guatambú
Guatambú
Guatambú
Guatambú
Guatambú
Mato Castelhano
Mato Castelhano
Cotiporã
Nova Roma do Sul
Bento Gonçalves
outgroups
R. arenarum
R. icterica
R. icterica
R. granulosa
R. merianae
R.merianae
R. icterica
R. icterica
state
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
PR
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
SC
RS
RS
RS
RS
RS
L
97
97
98
99
100
100
100
100
100
100
100
100
101
101
102
103
104
104
104
104
104
105
105
105
105
105
105
105
105
106
106
107
108
109
fragments
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1,ND2
control,ND1
control,ND1
control,ND1,ND2
control,ND1,ND2
control,ND1
ND1
-8-
Hap.
hap114
hap115
hap9
hap198
hap98
hap295
hap99
hap100
hap100
hap100
hap296
hap297
hap299
hap122
hap292
hap304
hap293
hap294
hap299
hap299
hap299
hap299
hap299
hap300
hap299
hap299
hap292
hap292
hap302
hap303
hap298
hap305
hap301
clade
c1
c1
c1
c1
c1
S
c1
c1
c1
c1
S
S
S
C
S
S
S
S
S
S
S
S
S
S
S
S
S
S
S
S
S
S
S
a.polypep.
al.1 al.2
nuclear
crystallin
al.1 al.2
rhodopsin
al.1 al.2
STR
183
184
185
193
186
187
189
190
188
191
192
194
195
196
4
1
4
4
21
1
22
1
1
-
1
1
4
1
22
1
22
1
1
-
11
11
18
26
154
11
155
71
155
14
15
11
11
155
11
155
11
155
5
1
12
3
3
25
6
3
6
2
6
15
25
16
16
3
5
21
51
53
53
57
21
-
5
22
52
54
56
56
22
-
28
159
151
152
156
156
155
156
157
158
28
160
151
153
156
156
156
155
5
5
12
3
10
1
2
3
3
3
-
12
3
5
2
2
15
4
25
-
58
21
21
13
61
55
21
59
22
21
22
22
55
60
156
159
156
162
163
163
155
156
160
156
163
163
163
161
25
3
3
3
3
25
25
25
3
25
25
3
25
25
25
25
25
15